deps: bump the python-non-major group across 1 directory with 16 updates by dependabot[bot] · Pull Request #44 · populationgenomics/palit

dependabot · 2026-08-07T20:38:42Z

Bumps the python-non-major group with 16 updates in the / directory:

Package	From	To
docling	`2.97.0`	`2.118.1`
markdown	`3.10.2`	`3.10.3`
nh3	`0.3.5`	`0.3.6`
openai	`2.41.0`	`2.53.0`
plotly	`6.8.0`	`6.9.0`
pydantic-settings	`2.14.1`	`2.15.0`
pypdf	`6.13.0`	`6.15.0`
tqdm	`4.68.1`	`4.70.0`
boto3	`1.43.24`	`1.43.67`
scipy	`1.17.1`	`1.18.0`
vllm	`0.22.1`	`0.26.0`
wandb	`0.27.1`	`0.28.1`
mypy	`2.1.0`	`2.3.0`
pre-commit	`4.6.0`	`4.6.1`
pytest	`9.0.3`	`9.1.1`
ruff	`0.15.16`	`0.16.2`

Updates docling from 2.97.0 to 2.118.1

Release notes

Sourced from docling's releases.

v2.118.1

Fix

layout: Normalize hyphenated labels in _build_label_map (#3936) (#3937) (5a14159)

Make sure the shapes are rendered in the threaded docling-parse (#3947) (c79b793)

Fixed HTML render to stop implicit file requests. (#3948) (1612b88)

pdf: Preserve pictures inside table cells (#3906) (8df76a5)

v2.118.0

Feature

Add the ebcdic backend (#3926) (9bdb2af)

service datamodel: Expose PDF heading-level inference in the service API (#3874) (a47f76a)

skills: Add agent skills for using docling (#3913) (5dc8c19)

Refactor RapidOcrModel to support all PP-OCR languages via version/backbone resolution (#3863) (f7eb9b4)

Fix

docx: Stop dropping section header/footer content in Docx (#3843) (2ec4f64)

docx: Resume ordered-list numbering after an intervening list (#3896) (#3897) (62f6a51)

docx: Keep body text after a blank spacer inside a list (#3898) (#3902) (7883aaa)

pdf: Rewind stream inputs in docling-parse (#3895) (995ae2a)

odf: Preserve text after inline elements (#3850) (955d579)

reading-order: Dehyphenate hard continuations (#3888) (52d8a6f)

pptx: Process slide shapes in visual reading order (#3393) (91fa745)

v2.117.0

Feature

service datamodels: Chunking options and targets (#3857) (0877ac0)

vlm: Expose OpenAI logprobs as generated tokens (#3903) (c18bdf8)

Fix

tests: Increase tolerance for fuzzy test on bbox (#3912) (8f9f2c8)

ocr: Make the OCR render scale configurable instead of hardcoded (#3877) (e7f9e60)

pdf-outline: Use iterative walk to avoid RecursionError on deep outlines (#3855) (81a0149)

Skip image enrichment without pages (#3875) (00acb59)

odf: Skip a draw:object whose embedded part is missing (#3876) (2c3e55b)

Documentation

Add trivial (pass-through) chunker example (#3861) (ba8251e)

v2.116.0

Feature

package: Expose docling.version (#3733) (#3905) (5d5a2b8)

Make StandardPdfPipeline stage shutdown timeout configurable (#3871) (fce704d)

Layout-driven OCR pipeline with configurable OCR modes and refactoring of the OCR GT dir structures (#3710) (9c742b2)

... (truncated)

Changelog

Sourced from docling's changelog.

v2.118.1 - 2026-08-07

Fix

layout: Normalize hyphenated labels in _build_label_map (#3936) (#3937) (5a14159)

Make sure the shapes are rendered in the threaded docling-parse (#3947) (c79b793)

Fixed HTML render to stop implicit file requests. (#3948) (1612b88)

pdf: Preserve pictures inside table cells (#3906) (8df76a5)

v2.118.0 - 2026-08-03

Feature

Add the ebcdic backend (#3926) (9bdb2af)

service datamodel: Expose PDF heading-level inference in the service API (#3874) (a47f76a)

skills: Add agent skills for using docling (#3913) (5dc8c19)

Refactor RapidOcrModel to support all PP-OCR languages via version/backbone resolution (#3863) (f7eb9b4)

Fix

docx: Stop dropping section header/footer content in Docx (#3843) (2ec4f64)

docx: Resume ordered-list numbering after an intervening list (#3896) (#3897) (62f6a51)

docx: Keep body text after a blank spacer inside a list (#3898) (#3902) (7883aaa)

pdf: Rewind stream inputs in docling-parse (#3895) (995ae2a)

odf: Preserve text after inline elements (#3850) (955d579)

reading-order: Dehyphenate hard continuations (#3888) (52d8a6f)

pptx: Process slide shapes in visual reading order (#3393) (91fa745)

v2.117.0 - 2026-07-30

Feature

service datamodels: Chunking options and targets (#3857) (0877ac0)

vlm: Expose OpenAI logprobs as generated tokens (#3903) (c18bdf8)

Fix

tests: Increase tolerance for fuzzy test on bbox (#3912) (8f9f2c8)

ocr: Make the OCR render scale configurable instead of hardcoded (#3877) (e7f9e60)

pdf-outline: Use iterative walk to avoid RecursionError on deep outlines (#3855) (81a0149)

Skip image enrichment without pages (#3875) (00acb59)

odf: Skip a draw:object whose embedded part is missing (#3876) (2c3e55b)

Documentation

Add trivial (pass-through) chunker example (#3861) (ba8251e)

v2.116.0 - 2026-07-29

Feature

... (truncated)

Commits

72bb55b chore: bump version to 2.118.1 [skip ci]
5a14159 fix(layout): normalize hyphenated labels in _build_label_map (#3936) (#3937)
c79b793 fix: make sure the shapes are rendered in the threaded docling-parse (#3947)
1612b88 fix: Fixed HTML render to stop implicit file requests. (#3948)
8df76a5 fix(pdf): preserve pictures inside table cells (#3906)
9b454c9 chore: bump version to 2.118.0 [skip ci]
9bdb2af feat: add the ebcdic backend (#3926)
2ec4f64 fix(docx): stop dropping section header/footer content in Docx (#3843)
62f6a51 fix(docx): resume ordered-list numbering after an intervening list (#3896) (#...
7883aaa fix(docx): keep body text after a blank spacer inside a list (#3898) (#3902)
Additional commits viewable in compare view

Updates markdown from 3.10.2 to 3.10.3

Release notes

Sourced from markdown's releases.

Release 3.10.3

Fixed

Fix SetextHeaderProcessor regex to prevent mixed = and - chars in setext-style headers (#1606).

Add AI Policy to Contributing Guide.

Officially document all included extensions as being in maintenance mode.

Link the Extension API documentation to the API Reference (#1612).

Changelog

Sourced from markdown's changelog.

[3.10.3] - 2026-07-30

Fixed

Fix SetextHeaderProcessor regex to prevent mixed = and - chars in setext-style headers (#1606).

Add AI Policy to Contributing Guide.

Officially document all included extensions as being in maintenance mode.

Link the Extension API documentation to the API Reference (#1612).

Commits

bb50627 Bump version to 3.10.3
8453df0 Update Extension API documentation
93ac448 Document that all extensions are in maintenance mode
d38fd4a Create AI Policy
ddead47 Prevent mixed =/- chars in Setext-style headings
See full diff in compare view

Updates nh3 from 0.3.5 to 0.3.6

Release notes

Sourced from nh3's releases.

v0.3.6

What's Changed

Validate clean_content_tags conflict with tags by @gghez in messense/nh3#125

Document tag_attribute_values as alternate to attributes by @gghez in messense/nh3#126

Add nh3.escape alias for clean_text by @gghez in messense/nh3#127

Bump pyo3 from 0.28.3 to 0.29.0 by @dependabot[bot] in messense/nh3#130

Expose ammonia's url_relative policy via url_relative kwarg by @gghez in messense/nh3#131

Full Changelog: messense/nh3@v0.3.5...v0.3.6

Commits

bea70df Bump version to 0.3.6
788cee2 Expose ammonia's url_relative policy via url_relative kwarg (#131)
e76a81a Bump pyo3 from 0.28.3 to 0.29.0 (#130)
8ec45a3 Add nh3.escape alias for clean_text (#127)
a1e0226 Document tag_attribute_values as alternate to attributes (#126)
389fb79 Validate clean_content_tags conflict with tags (#125)
61aad5a Bump uraimo/run-on-arch-action in the github-actions group (#124)
See full diff in compare view

Updates openai from 2.41.0 to 2.53.0

Release notes

Sourced from openai's releases.

v2.53.0

2.53.0 (2026-08-03)

Features

api: Add gpt-5.5 and tool name/namespace to Responses types (#3569) (dd1202d)

Bug Fixes

ci: avoid NumPy source builds and duplicate HTTPX coverage (#3573) (b58332f)

v2.52.1

2.52.1 (2026-07-31)

Full Changelog: v2.52.0...v2.52.1

Chores

ci: pin setup-uv v5 to its underlying commit (#3560) (cbdc98b)

v2.52.0

2.52.0 (2026-07-31)

Full Changelog: v2.51.0...v2.52.0

Features

api: content provenance checks (1d6c118)

Bug Fixes

client: honor Retry-After delays up to two minutes (#3555) (7fa7946)

Documentation

add API-key mTLS HTTP client recipes (#3552) (7a3d5e4)

v2.51.0

2.51.0 (2026-07-30)

Full Changelog: v2.50.0...v2.51.0

Features

api: fast tier (8808ed2)

... (truncated)

Changelog

Sourced from openai's changelog.

2.53.0 (2026-08-03)

Features

api: Add gpt-5.5 and tool name/namespace to Responses types (#3569) (dd1202d)

Bug Fixes

ci: avoid NumPy source builds and duplicate HTTPX coverage (#3573) (b58332f)

2.52.1 (2026-07-31)

Full Changelog: v2.52.0...v2.52.1

Chores

ci: pin setup-uv v5 to its underlying commit (#3560) (cbdc98b)

2.52.0 (2026-07-31)

Full Changelog: v2.51.0...v2.52.0

Features

api: content provenance checks (1d6c118)

Bug Fixes

client: honor Retry-After delays up to two minutes (#3555) (7fa7946)

Documentation

add API-key mTLS HTTP client recipes (#3552) (7a3d5e4)

2.51.0 (2026-07-30)

Full Changelog: v2.50.0...v2.51.0

Features

api: fast tier (8808ed2)

Bug Fixes

api: add fast tier to helper methods (6064126)

... (truncated)

Commits

5e36cd3 release: 2.53.0 (#3575)
875a5c2 ci: prepare checks for merge queue (#3574)
b58332f fix(ci): avoid NumPy source builds and duplicate HTTPX coverage (#3573)
dd1202d feat(api): Add gpt-5.5 and tool name/namespace to Responses types (#3569)
24b7cd1 ci: migrate release-please to upstream action (#3568)
f83b1f4 release: 2.52.1 (#3562)
cbdc98b chore(ci): pin setup-uv v5 to its underlying commit (#3560)
ca693fb release: 2.52.0
2ad8c98 feat(api): content provenance checks
7a3d5e4 docs: add API-key mTLS HTTP client recipes (#3552)
Additional commits viewable in compare view

Updates plotly from 6.8.0 to 6.9.0

Release notes

Sourced from plotly's releases.

v6.9.0

Fixed

Raise a clear ValueError when an unsupported marginal plot type is passed to Plotly Express, instead of failing later with a cryptic 'NoneType' object has no attribute 'constructor' message [#5625], with thanks to @eugen-goebel for the contribution!

Updated

Update plotly.js from version 3.6.0 to version 3.7.0. See the plotly.js release notes for more information [#5639]. Notable changes include:

Rename sendDataToCloud modebar button to sendChartToCloud, and update to upload chart to Plotly Cloud [#7802, #7852, #7854]. NOTE: The Plotly Cloud endpoint for receiving charts is not yet functional, so this button won't complete the upload.

Fix stale scattergl error bars after toggling traces with mixed error bar visibility [#7773], with thanks to @JulienIcon for the contribution!

Fix geo fitbounds to choose a compact longitude range when point data straddles the antimeridian [#7837], with thanks to @SharadhNaidu for the contribution!

Full Changelog: plotly/plotly.py@v6.8.0...v6.9.0

Changelog

Sourced from plotly's changelog.

[6.9.0] - 2026-07-09

Fixed

Raise a clear ValueError when an unsupported marginal plot type is passed to Plotly Express, instead of failing later with a cryptic 'NoneType' object has no attribute 'constructor' message [#5625], with thanks to @eugen-goebel for the contribution!

Read and write figure JSON files as UTF-8 in read_json/write_json so figures containing non-ASCII text are handled correctly on platforms whose default encoding is not UTF-8 (e.g. cp1252 on Windows) [#5633]

Updated

Update plotly.js from version 3.6.0 to version 3.7.0. See the plotly.js release notes for more information [#5639]. Notable changes include:

Rename sendDataToCloud modebar button to sendChartToCloud, and update to upload chart to Plotly Cloud [#7802, #7852, #7854]. NOTE: The Plotly Cloud endpoint for receiving charts is not yet functional, so this button won't complete the upload.

Fix stale scattergl error bars after toggling traces with mixed error bar visibility [#7773], with thanks to @JulienIcon for the contribution!

Fix geo fitbounds to choose a compact longitude range when point data straddles the antimeridian [#7837], with thanks to @SharadhNaidu for the contribution!

Commits

495134a update date
2e824d8 version changes for v6.9.0
c27c986 Merge pull request #5639 from plotly/update-plotlyjs-3.7.0
3d63d05 typos
fd7e3f1 update commands.py and CONTRIBUTING.md to reflect the fact that JS build arti...
9a753fe update changelog
4ff6656 update built JS artifacts
b3facc7 update plotly.js to v3.7.0
5cdb606 Merge pull request #5630 from eugen-goebel/fix-marginal-error-message-spacing
8d47808 Add missing space in unsupported-marginal error message
Additional commits viewable in compare view

Updates pydantic-settings from 2.14.1 to 2.15.0

Release notes

Sourced from pydantic-settings's releases.

v2.15.0

Highlights

Behavior changes

case_sensitive now applies to init kwargs and config-file sources (#900). InitSettingsSource and the JSON/TOML/YAML config sources previously ignored case_sensitive. Since it defaults to False, case-insensitive matching is now the default for these sources — e.g. Settings(TeSt=...) now populates a test field where it previously did not. Nested keys are still matched case-sensitively.

Fields with unresolved forward references now emit a warning (#901). Settings sources can silently fail to resolve such fields; they now raise IncompleteFieldDefinitionWarning telling you to call model_rebuild(). If you have filterwarnings = error configured, this may surface as a new failure.

Non-JSON env values for strict fields now raise ValidationError (#926) instead of a less specific error.

New features

Show environment variable names in CLI help via cli_show_env_vars=True (#860), so generated --help output doubles as configuration documentation.

PYDANTIC_SETTINGS_DEBUG for debugging settings resolution (#906, #913). Set it to a truthy value with DEBUG logging enabled to see each source's contribution in priority order, which source won for each value, and which env_file/secret files were probed, loaded, or skipped — the long-standing "why isn't my .env being picked up?" question.

toml_table_header for regular TOML files (#882, #886, #887), letting you root settings at a nested table in any TOML file, not just pyproject.toml.

Traversable support for JSON/TOML/YAML file sources (#902), so you can load config packaged inside a distribution — including files inside a zip or wheel — via importlib.resources.files(...) without casting to Path.

GCP: project_id can come from an earlier settings source (#878), rather than only from the constructor or GOOGLE_CLOUD_PROJECT.

Bug fixes

Fix env vars not loading on Windows with case_sensitive=True (#894). Windows upper-cases os.environ keys, so fields raised Field required instead of picking up their values.

Read secret files as UTF-8 instead of the platform locale encoding (#917). On Windows code pages such as cp1252 this silently corrupted non-ASCII secrets.

Fix AliasPath on nested model fields not JSON-decoding env values (#898).

Fix case-insensitive matching for optional nested models (#905).

Fix dotenv extras being wrongly claimed by a complex field sharing a name prefix (#912) — e.g. dbx_token being swallowed by a db: dict field.

Fix nested_model_default_partial_update=True corrupting discriminated unions (#876).

Fix Secret subclasses crashing when loaded from the environment (#920).

Fix enum names not parsing through nested annotations such as Optional[Annotated[MyEnum, ...]] with env_parse_enums=True (#910).

An empty yaml_config_section now falls back to defaults instead of raising AttributeError: 'NoneType' object has no attribute 'keys' (#914).

NestedSecretsSettingsSource no longer follows symlinks pointing outside secrets_dir (#889).

GCP: skip the list_secrets call when case_sensitive=True (#862), lowering the required IAM permissions to just roles/secretmanager.secretAccessor.

AWS: types-boto3[secretsmanager] is no longer required at runtime (#880).

Documentation

Document JSON parsing of complex env values, plus a comma-separated-values recipe (#919).

Recommend an async settings loading pattern (#908).

Clarify behavior when an unprefixed value is present in a dotenv file (#895).

Clarify environment variable helper descriptions (#867) and fix assorted typos (#904).

What's Changed

Update documentation link for Pydantic settings by @hramezani in pydantic/pydantic-settings#863

Bump the python-packages group with 4 updates by @dependabot[bot] in pydantic/pydantic-settings#865

docs: clarify environment variable helper descriptions by @vip892766gma in pydantic/pydantic-settings#867

Bump the python-packages group with 4 updates by @dependabot[bot] in pydantic/pydantic-settings#870

Bump the python-packages group with 4 updates by @dependabot[bot] in pydantic/pydantic-settings#875

Skip list_secrets call when case_sensitive=True by @ecerulm in pydantic/pydantic-settings#862

GoogleSecretManagerSettingsSource: read project_id from previous sources by @ecerulm in pydantic/pydantic-settings#878

... (truncated)

Commits

f725ca1 Prepare release 2.15.0 (#930)
28f35c2 Bump the python-packages group with 4 updates (#929)
9056db0 test: move function-local imports to the top of test modules (#927)
f077e3a fix: raise ValidationError for non-JSON env values on strict fields (#926)
ae25d70 fix: treat Secret subclasses as non-complex fields (#716) (#920)
798dcea Bump the python-packages group with 4 updates (#924)
a190041 Bump the github-actions group with 4 updates (#925)
5d93332 Bump the python-packages group with 4 updates (#921)
d2fdeda fix: read secret files as UTF-8 instead of the locale encoding (#917)
2256a4e Bump the python-packages group with 3 updates (#915)
Additional commits viewable in compare view

Updates pypdf from 6.13.0 to 6.15.0

Release notes

Sourced from pypdf's releases.

Version 6.15.0, 2026-08-06

What's new

Security (SEC)

Improve performance of read_until_whitespace (#3947) by @stefan6419846

Limit CID width range and width count when loading fonts (#3946) by @stefan6419846

Limit token length for ToUnicode entries (#3944) by @stefan6419846

Deprecations (DEP)

Deprecate previously missed inline_images setter as well (#3897) by @stefan6419846

New Features (ENH)

Add ActualText tag when we produce RTL appearance stream (#3901) by @PJBrs

Allow keeping original PDF header in non-incremental clone mode (#3918) by @pctablet505

AppearanceStream: Add support for RTL appearance streams with Arabic characters (#3831) by @PJBrs

Add actions base class (#3552) by @j-t-1

Bug Fixes (BUG)

Expand low-bit samples for images without a filter (#3938) by @RavSinghChandan

Decode low-bit DeviceRGB images as RGB instead of palette (#3929) by @RavSinghChandan

Correctly handle IndirectObject in FlateDecode.decode DecodeParms (#3937) by @stefan6419846

Documentation (DOC)

Image and attachment filenames are unsanitized (#3942) by @stefan6419846

Maintenance (MAINT)

Update charset mappings (#3935) by @stefan6419846

Full Changelog

Version 6.14.2, 2026-06-23

What's new

Security (SEC)

Avoid infinite loops for incomplete ASCII85 and ASCIIHex inline images (#3892) by @stefan6419846

Full Changelog

Version 6.14.1, 2026-06-23

What's new

Security (SEC)

Detect end of stream during inline image end marker detection (#3891) by @stefan6419846

Full Changelog

Version 6.14.0, 2026-06-22

What's new

Security (SEC)

... (truncated)

Changelog

Sourced from pypdf's changelog.

Version 6.15.0, 2026-08-06

Security (SEC)

Improve performance of read_until_whitespace (#3947)

Limit CID width range and width count when loading fonts (#3946)

Limit token length for ToUnicode entries (#3944)

Deprecations (DEP)

Deprecate previously missed inline_images setter as well (#3897)

New Features (ENH)

Add ActualText tag when we produce RTL appearance stream (#3901)

Allow keeping original PDF header in non-incremental clone mode (#3918)

AppearanceStream: Add support for RTL appearance streams with Arabic characters (#3831)

Add actions base class (#3552)

Bug Fixes (BUG)

Expand low-bit samples for images without a filter (#3938)

Decode low-bit DeviceRGB images as RGB instead of palette (#3929)

Correctly handle IndirectObject in FlateDecode.decode DecodeParms (#3937)

Documentation (DOC)

Image and attachment filenames are unsanitized (#3942)

Maintenance (MAINT)

Update charset mappings (#3935)

Full Changelog

Version 6.14.2, 2026-06-23

Security (SEC)

Avoid infinite loops for incomplete ASCII85 and ASCIIHex inline images (#3892)

Full Changelog

Version 6.14.1, 2026-06-23

Security (SEC)

Detect end of stream during inline image end marker detection (#3891)

Full Changelog

Version 6.14.0, 2026-06-22

Security (SEC)

Apply general limit for requested image size (#3888)

Speed up recovery when reading broken cross-reference table (#3887)

New Features (ENH)

... (truncated)

Commits

7f226a2 REL: 6.15.0
4959848 SEC: Improve performance of read_until_whitespace (#3947)
51cb6ac SEC: Limit CID width range and width count when loading fonts (#3946)
afba808 SEC: Limit token length for ToUnicode entries (#3944)
aa2f37d DOC: Image and attachment filenames are unsanitized (#3942)
760ba28 DOC: Further clarify security policy
55bd85c BUG: Expand low-bit samples for images without a filter (#3938)
4807cb4 ROB: Tolerate malformed /FontBBox when building font descriptors (#3895)
ce9320b DEV: Bump pypa/gh-action-pypi-publish from 1.14.1 to 1.14.2 (#3941)
8b6f6fd ENH: Add ActualText tag when we produce RTL appearance stream (#3901)
Additional commits viewable in compare view

Updates tqdm from 4.68.1 to 4.70.0

Release notes

Sourced from tqdm's releases.

tqdm v4.70.0 stable

contrib.concurrent: major improvements

support process_map(mp_context, max_tasks_per_child), thread_map(thread_name_prefix) (#1265)

fix total based on shortest iterable length (#1473)

use default max_workers (#1543 <- #1530, #1518)

support timeout, buffersize (#1576)

improve ETA (#1708 <- #1161)

update as_completed (#1709 <- #1565)

add tqdm.concurrent.intepreter_map (#1777)

asyncio: support iterables with only __aiter__ (#1714 <- #1686)

support reset(float("inf")) (#1783 <- #1781, #651)

framework: test & reduce wheel size (#1782)

tqdm v4.69.1 stable

contrib.logging: preserve filters (

Bumps the python-non-major group with 16 updates in the / directory: | Package | From | To | | --- | --- | --- | | [docling](https://github.com/docling-project/docling) | `2.97.0` | `2.118.1` | | [markdown](https://github.com/Python-Markdown/markdown) | `3.10.2` | `3.10.3` | | [nh3](https://github.com/messense/nh3) | `0.3.5` | `0.3.6` | | [openai](https://github.com/openai/openai-python) | `2.41.0` | `2.53.0` | | [plotly](https://github.com/plotly/plotly.py) | `6.8.0` | `6.9.0` | | [pydantic-settings](https://github.com/pydantic/pydantic-settings) | `2.14.1` | `2.15.0` | | [pypdf](https://github.com/py-pdf/pypdf) | `6.13.0` | `6.15.0` | | [tqdm](https://github.com/tqdm/tqdm) | `4.68.1` | `4.70.0` | | [boto3](https://github.com/boto/boto3) | `1.43.24` | `1.43.67` | | [scipy](https://github.com/scipy/scipy) | `1.17.1` | `1.18.0` | | [vllm](https://github.com/vllm-project/vllm) | `0.22.1` | `0.26.0` | | [wandb](https://github.com/wandb/wandb) | `0.27.1` | `0.28.1` | | [mypy](https://github.com/python/mypy) | `2.1.0` | `2.3.0` | | [pre-commit](https://github.com/pre-commit/pre-commit) | `4.6.0` | `4.6.1` | | [pytest](https://github.com/pytest-dev/pytest) | `9.0.3` | `9.1.1` | | [ruff](https://github.com/astral-sh/ruff) | `0.15.16` | `0.16.2` | Updates `docling` from 2.97.0 to 2.118.1 - [Release notes](https://github.com/docling-project/docling/releases) - [Changelog](https://github.com/docling-project/docling/blob/main/CHANGELOG.md) - [Commits](docling-project/docling@v2.97.0...v2.118.1) Updates `markdown` from 3.10.2 to 3.10.3 - [Release notes](https://github.com/Python-Markdown/markdown/releases) - [Changelog](https://github.com/Python-Markdown/markdown/blob/master/docs/changelog.md) - [Commits](Python-Markdown/markdown@3.10.2...3.10.3) Updates `nh3` from 0.3.5 to 0.3.6 - [Release notes](https://github.com/messense/nh3/releases) - [Commits](messense/nh3@v0.3.5...v0.3.6) Updates `openai` from 2.41.0 to 2.53.0 - [Release notes](https://github.com/openai/openai-python/releases) - [Changelog](https://github.com/openai/openai-python/blob/main/CHANGELOG.md) - [Commits](openai/openai-python@v2.41.0...v2.53.0) Updates `plotly` from 6.8.0 to 6.9.0 - [Release notes](https://github.com/plotly/plotly.py/releases) - [Changelog](https://github.com/plotly/plotly.py/blob/main/CHANGELOG.md) - [Commits](plotly/plotly.py@v6.8.0...v6.9.0) Updates `pydantic-settings` from 2.14.1 to 2.15.0 - [Release notes](https://github.com/pydantic/pydantic-settings/releases) - [Commits](pydantic/pydantic-settings@v2.14.1...v2.15.0) Updates `pypdf` from 6.13.0 to 6.15.0 - [Release notes](https://github.com/py-pdf/pypdf/releases) - [Changelog](https://github.com/py-pdf/pypdf/blob/main/CHANGELOG.md) - [Commits](py-pdf/pypdf@6.13.0...6.15.0) Updates `tqdm` from 4.68.1 to 4.70.0 - [Release notes](https://github.com/tqdm/tqdm/releases) - [Commits](tqdm/tqdm@v4.68.1...v4.70.0) Updates `boto3` from 1.43.24 to 1.43.67 - [Release notes](https://github.com/boto/boto3/releases) - [Commits](boto/boto3@1.43.24...1.43.67) Updates `scipy` from 1.17.1 to 1.18.0 - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](scipy/scipy@v1.17.1...v1.18.0) Updates `vllm` from 0.22.1 to 0.26.0 - [Release notes](https://github.com/vllm-project/vllm/releases) - [Changelog](https://github.com/vllm-project/vllm/blob/main/RELEASE.md) - [Commits](vllm-project/vllm@v0.22.1...v0.26.0) Updates `wandb` from 0.27.1 to 0.28.1 - [Release notes](https://github.com/wandb/wandb/releases) - [Changelog](https://github.com/wandb/wandb/blob/main/CHANGELOG.md) - [Commits](wandb/wandb@v0.27.1...v0.28.1) Updates `mypy` from 2.1.0 to 2.3.0 - [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md) - [Commits](python/mypy@v2.1.0...v2.3.0) Updates `pre-commit` from 4.6.0 to 4.6.1 - [Release notes](https://github.com/pre-commit/pre-commit/releases) - [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md) - [Commits](pre-commit/pre-commit@v4.6.0...v4.6.1) Updates `pytest` from 9.0.3 to 9.1.1 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest@9.0.3...9.1.1) Updates `ruff` from 0.15.16 to 0.16.2 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.15.16...0.16.2) --- updated-dependencies: - dependency-name: boto3 dependency-version: 1.43.62 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-non-major - dependency-name: docling dependency-version: 2.117.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-non-major - dependency-name: markdown dependency-version: 3.10.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-non-major - dependency-name: mypy dependency-version: 2.3.0 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: python-non-major - dependency-name: nh3 dependency-version: 0.3.6 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-non-major - dependency-name: openai dependency-version: 2.52.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-non-major - dependency-name: plotly dependency-version: 6.9.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-non-major - dependency-name: pre-commit dependency-version: 4.6.1 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: python-non-major - dependency-name: pydantic-settings dependency-version: 2.14.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-non-major - dependency-name: pypdf dependency-version: 6.14.2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-non-major - dependency-name: pytest dependency-version: 9.1.1 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: python-non-major - dependency-name: ruff dependency-version: 0.16.1 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: python-non-major - dependency-name: scipy dependency-version: 1.18.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-non-major - dependency-name: tqdm dependency-version: 4.70.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-non-major - dependency-name: vllm dependency-version: 0.26.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-non-major - dependency-name: wandb dependency-version: 0.28.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-non-major ... Signed-off-by: dependabot[bot] <support@github.com>

dependabot · 2026-08-21T20:38:00Z

Looks like these dependencies are updatable in another way, so this is no longer needed.

dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Aug 7, 2026

dependabot Bot requested a review from lgruen-vcgs as a code owner August 7, 2026 20:38

dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Aug 7, 2026

dependabot Bot force-pushed the dependabot/uv/python-non-major-6413ac9109 branch from 3d300c4 to 7bbf166 Compare August 14, 2026 20:38

dependabot Bot closed this Aug 21, 2026

dependabot Bot deleted the dependabot/uv/python-non-major-6413ac9109 branch August 21, 2026 20:38

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deps: bump the python-non-major group across 1 directory with 16 updates - #44

deps: bump the python-non-major group across 1 directory with 16 updates#44
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v2.118.1

Fix

v2.118.0

Feature

Fix

v2.117.0

Feature

Fix

Documentation

v2.116.0

Feature

v2.118.1 - 2026-08-07

Fix

v2.118.0 - 2026-08-03

Feature

Fix

v2.117.0 - 2026-07-30

Feature

Fix

Documentation

v2.116.0 - 2026-07-29

Feature

Release 3.10.3

Fixed

[3.10.3] - 2026-07-30

Fixed

v0.3.6

What's Changed

v2.53.0

2.53.0 (2026-08-03)

Features

Bug Fixes

v2.52.1

2.52.1 (2026-07-31)

Chores

v2.52.0

2.52.0 (2026-07-31)

Features

Bug Fixes

Documentation

v2.51.0

2.51.0 (2026-07-30)

Features

2.53.0 (2026-08-03)

Features

Bug Fixes

2.52.1 (2026-07-31)

Chores

2.52.0 (2026-07-31)

Features

Bug Fixes

Documentation

2.51.0 (2026-07-30)

Features

Bug Fixes

v6.9.0

Fixed

Updated

[6.9.0] - 2026-07-09

Fixed

Updated

v2.15.0

Highlights

Behavior changes

New features

Bug fixes

Documentation

What's Changed

Version 6.15.0, 2026-08-06

What's new

Security (SEC)

Deprecations (DEP)

New Features (ENH)

Bug Fixes (BUG)

Documentation (DOC)

Maintenance (MAINT)

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